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Green Enchilada Casserole with Chicken (AIP, Paleo, Whole30, GF)

Sep 4, 2021 · 8 Comments

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If you’re looking for a good AIP green enchilada recipe, this is it! I didn’t think it was really possible to make a green “chili” tasting enchilada sauce without nightshades but this stuff is awesome.

I got the seal of approval from my husband and kids as they polished off nearly the whole casserole when they tried it. It takes a little time to pull together but prep is pretty simple.

I’ve also got an AIP Green Enchilada Soup recipe if you’d prefer to have soup.

If you’re looking for more dinner ideas, definitely take a look at my AIP Chicken Recipes roundup post.

**Just a quick heads up- this post contains affiliate links which means if you click on them and buy something,  I will earn a small commission (at no additional cost to you) to help continue maintaining this site. 

aip green enchiladas

What Ingredients are Needed for AIP Green Enchiladas?

  • Boneless Skinless Chicken Thighs– I like to use chicken thighs in recipes because they are more tender than chicken breasts. However, you can use chicken breasts if you want. Just keep in mind that you will probably need to cook them a little bit longer as they are usually thicker than chicken thighs.
  • White Sweet Potatoes– I decided to use thinly sliced white sweet potatoes as the tortilla layer for these enchiladas. I did this simply because it’s time-consuming to have to stop and make AIP tortillas to put in your AIP enchiladas. It’s also, not always easy to find store-bought tortillas that are compliant.

If you can’t find white sweet potatoes, you can also use yucca root, Malanga Blanca, or regular sweet potatoes (keep in mind regular sweet potatoes are sweeter than white sweet potatoes).

If you prefer to use tortillas in this recipe, this is of course an option. You can always make them ahead of time so that they are ready to go when you make the enchiladas. Here’s a recipe you can use. You can also check out some AIP compliant store-bought tortillas below.

  • Fresh Spinach– Spinach gives an easy veggie boost to these enchiladas. I usually cut the spinach leaves with kitchen shears so they are in tiny pieces. This way huge spinach leaves aren’t overtaking your enchiladas.

 

Ingredients For the Nightshade-Free Green Enchilada Sauce:

Melted Coconut Oil or oil of choice– This is for coating the veggies for the sauce. I prefer to use coconut oil or another saturated fat oil like lard or tallow simply because they stand up to high temperatures better. Any oil you choose will work fine though

Yellow Onion- You can use white or yellow onion for the sauce. Even red onion would probably work fine.

Green Onion- Green onions roast really nicely and get a really full-bodied almost pepper-like flavor going.

Cucumber- I’ve never thought of cucumbers as something to eat warm but they work perfectly in this sauce.

Garlic Cloves– These give a full-body flavor to the sauce.

Lime juice– Lime juice provides just the right amount of tang.

Sea salt– I generally use pink Himalayan sea salts but any sea salt is fine

Water- Water helps to thin out the sauce slightly. You can also use broth. 

aip green enchiladas

How to Make AIP Green Enchiladas

  • The salsa verde is made by roasting white onion, green onion, cucumber, and garlic in the oven for about 40 minutes. Once they’re done cooking, they can be added to a blender and blended with a little lime juice, salt, and water.
  • The chicken thighs will be cooked in the oven at the same time as the veggies for the salsa verde.
  • While the veggies and chicken are cooking, boil a pot of water on the stove and thinly slice the white sweet potatoes for the “tortilla” layers (see picture below). You can remove the skin or leave it on. Boil the sweet potatoes for about 5 minutes or until tender.
  • Shred the chicken using 2 forks.
  • Assemble the enchiladas by layering sauce, sweet potatoes, chicken, spinach, etc.
  • Bake the casserole in the oven at 425 degrees for about 20 minutes.
  • Make the avocado topping and add to the top of the casserole once it cools a little bit.
  • Garnish with cilantro.
aip green enchiladas

Tortilla Options for AIP Enchiladas

As mentioned above, you can use other root vegetables for the tortilla layers but if you want to save time and use store-bought tortillas, there are a few AIP-friendly options. Note- I think these would all probably work well in the casserole but I haven’t tested any of them in this particular recipe.

Nuco Coconut Wraps: These contain just coconut meat, coconut water, and oil. Simple! Get them on Amazon or ShopAIP.

Nuco Coconut Cassava Wraps: Made with coconut meat, cassava, and coconut water. Get them on Amazon or ShoprAIP.

Siete Burrito Size Tortillas– These are the only Siete brand tortillas I’ve seen that are AIP compliant. This particular product isn’t really available on Amazon but you can get them on the Siete website and may be able to find them in some stores.

Homemade Cassava Tortillas

Enchilada Toppings

The avocado mixture for this recipe is an optional topping. I love it because it makes the enchiladas taste very fresh and light. This being said, while my family loved the enchiladas with the topping, they said it tasted more “enchilada-y” without the topping. So, I think this will just come down to personal preference.

The avocado topping includes: 

  • Avocados- Avocados add a cool creamy rich flavor to the enchiladas.
  • Red Onion- Onion adds a little bit of crunch and flavor.
  • Cucumbers- Just a little bit of cucumbers added to the avocado mixture makes for a cool refreshing topping.
  • Cilantro- Cilantro is used as a garnish. It adds yet another flavor dynamic and It just looks nice.
  • Lime Juice- Add just the right amount of tang.
  • Sea Salt- Add just a dash to taste.

If you feel this topping isn’t for you, you can try other toppings like:

  • 4 Ingredient Guacamole
  • Shredded Lettuce
  • Black Olives
  • Sliced Radishes
  • Sliced Red Onions
  • Green Onions
  • Bacon Pieces

Notes:

  • Be sure to blend the sauce really well. The green onions can be a little bit tough on the blender so just be sure to blend the mixture long enough to incorporate them thoroughly.
  • Allow the casserole to cool a little bit before adding the avocado topping. Otherwise, you end up with warm avocados.
  • Serve with a side salad or cauliflower rice
aip green enchiladas

Can I Make These Green Enchiladas Ahead of Time?

  • Yes! You can save a lot of time with this recipe by prepping some of the components ahead of time. The sauce is the component that takes the most time and it can be made in bulk and stored in the fridge or freezer for later. If the sauce is ready to go, the rest of the recipe comes together pretty quickly. Having the chicken cooked and shredded ahead of time will also speed things up. In a pinch, canned chicken could be used to save some time. Just make sure there are no added starches or other non-compliant ingredients in it.
  • If you want to make the whole enchilada casserole ahead of time, that’s an option as well. Just assemble the casserole (minus the avocado topping). Cover and store the casserole in the fridge for one or two days and then cook it when you’re ready. 
  • When it comes time to cook it in the oven, put it in the oven while the oven is still cool and allow the oven and the dish to heat up together. If you try to put a cold glass dish in a hot oven, it could cause the dish to break or even “explode” depending on what kind of dish it is and how it was made. As an extra precaution, you could place the glass dish on a baking sheet.

Can I Freeze These Enchiladas?

Yes. You can freeze the enchilada casserole either before or after you cook it. Store it in a freezer-safe casserole dish and cover it tightly. It will stay good in the freezer for 2-3 months.

When you’re ready to use it, thaw it in the fridge overnight, then follow the cooking instructions above and in the recipe.

If you enjoyed this post, you may also like: 

Moroccan Chicken Stew

Chicken Kelaquen

Strawberry Basil Chicken

Ground Turkey Stroganoff

55+ Easy AIP Meals For Beginners

 

Sideview of a slice of AIP chicken enchiladas on a teal plate with the casserole in the background.

Conclusion:

I hope you love this recipe. If you tried it, I’d love to hear what you thought! If you tried packaged AIP tortillas in it, I’d love to hear how it turned out. Please leave a comment below!

This post is shared on the Paleo/AIP recipe roundtable.

Don’t forget to follow me on Instagram @foodcourage for the latest AIP/Paleo recipes, autoimmune nutrition info, and Food Courage happenings!

If you liked this post, please share it!

aip paleo green enchiladas

Overhead view of chicken enchilada casserole on a teal striped placemat with forks and colorful plates nearby.

Green Enchilada Casserole with Chicken (AIP, Paleo, Whole30, Gluten-Free)

Arika | FoodCourage
These nightshade-free enchiladas and so satisfying and they taste like the real thing!
4.78 from 9 votes
Print Recipe Pin Recipe
Prep Time 20 minutes mins
Cook Time 1 hour hr
Total Time 1 hour hr 20 minutes mins
Course Main Course
Cuisine Mexican
Servings 6 servings
Calories 324 kcal

Equipment

  • Blender or food processor
  • 2 Sheet Pans
  • Glass Baking Dish

Ingredients
  

Enchilada Sauce

  • 1 white or yellow onion, chopped (about 2.5 cups)
  • 3 bunches green onions, cut into fourths (about 5 cups)
  • 1 medium cucumber, chopped (2 cups)
  • 8 whole garlic cloves
  • 1 tbsp melted coconut oil or oil of choice
  • 1/4 cup lime juice
  • 1-2 tsp sea salt (to taste)
  • 1/4 cup water or chicken broth

Other Layers

  • 1.5 pounds boneless, skinless chicken thighs (2.5-3 cups chopped)
  • dash sea salt (for chicken)
  • 2 medium-sized white sweet potatoes (or starchy vegetable of choice) (about 800 grams)
  • 2 cups chopped fresh spinach (4 cups whole leaves)

Avocado Topping (optional)

  • 2 medium avocado, chopped
  • 2 tbsp red onion, diced
  • 1/4 cup cucumbers, diced
  • 1/2 tbsp lime juice
  • dash of sea salt

Garnish

  • 1/4 cup fresh cilantro leaves, chopped
Get Recipe Ingredients

Instructions
 

  • Preheat the oven to 450 degrees Fahrenheit.
  • Prep the sauce vegetables and chicken for the oven (see next steps).
  • For the sauce veggies (white onion, green onion, cucumber, and garlic)- Make sure they are cut into similar-sized pieces. Cut them somewhat small so they don't take a long time to cook but not so tiny that they burn. The garlic will be left whole- it'll be a little smaller than the other veggies but that's ok. The green onions will be cut in fourths. Place all the vegetables together on a parchment paper-lined baking sheet. Drizzle the oil over them and toss to coat. Roast for about 40 minutes or until they start to brown. Check every 15 minutes or so and stir to prevent burning.
  • Add the chicken thighs to a second baking sheet (parchment paper-lined or greased) and sprinkle with sea salt. Add it to the oven with the veggies. Bake for about 30 minutes or until it reaches an internal temperature of at least 165 degrees Fahrenheit.
  • While the chicken and vegetables are cooking, put a large pot of water on the stove over high heat. Bring to a boil.
  • Peel the sweet potatoes (optional)- I prefer to leave the skin on. Then, very thinly slice them length-wise to create sheets of sweet potato. Think about it as if you're making tortilla layers. This gets a little tricky once you've cut about half of the potato because it becomes unstable and hard to hold onto. To help with this, turn the potato onto its flat side once you've cut a few slices off- this will prevent it from rolling.
  • Add the sweet potato layers to the pot of boiling water and boil for about 5 minutes or until the slices are tender but not falling apart. Watch them closely. Drain the water once done and set aside.
  • Take the veggies and chicken out of the oven once cooked. Turn the oven temp down to 425 degrees (you'll bake the casserole once it's assembled). Shred the chicken using two forks. Set aside.
  • Add the sauce veggies (onion, green onion, garlic, cucumbers) to a blender or food processor along with the lime juice and salt. Blend until smooth.
  • Assemble the casserole: Add about 2 tbsp of the sauce to the bottom of a 9"x11" glass casserole/baking dish, then add a layer of sweet potatoes placed closely together. Next, add a layer of shredded chicken, then spinach, then a layer of sauce. Spread the sauce evenly with the back of a spoon. Repeat the process 1-2 times or until you run out of ingredients (you should have about 2 layers of potato/chicken/spinach/sauce). End the layering pattern with an additional layer of sweet potato topped with sauce. Bake at 425 degrees F for about 20 minutes or until the center is hot.
  • Mix together the avocado topping. Once the casserole is done baking, allow it to cool for about 10-15 minutes, then add the toppings. Garnish with cilantro and serve.

Notes

*If you prefer not to use white sweet potatoes as your "tortilla" layers, you can use another starchy vegetable like yuca root, orange sweet potatoes, or malanga blanca. You can also use homemade cassava tortillas or if you're not strict AIP, Siete tortillas are an option. 
Making the dish ahead of time: If you want to make the whole enchilada casserole ahead of time, that's an option.  Just assemble the casserole (minus the avocado topping). Cover and store the casserole in the fridge for one or two days and then cook it when you’re ready. 
To heat straight from the fridge: When it comes time to cook it in the oven, put it in the oven while the oven is still cool and allow the oven and the dish to heat up together. If you try to put a cold glass dish in a hot oven, it could cause the dish to break or even "explode" depending on what kind of dish it is and how it was made. As an extra precaution, you could place the glass dish on a baking sheet.
For Freezing: You can freeze the enchilada casserole either before or after you cook it. Store it in a freezer-safe casserole dish and cover it tightly. It will stay good in the freezer for 2-3 months.
When you're ready to use it, thaw it in the fridge overnight, then follow the cooking instructions above and in the recipe.

Nutrition

Nutrition Facts
Green Enchilada Casserole with Chicken (AIP, Paleo, Whole30, Gluten-Free)
Serving Size
 
1.5 cups
Amount per Serving
Calories
324
% Daily Value*
Fat
 
17
g
26
%
Saturated Fat
 
5
g
31
%
Trans Fat
 
1
g
Polyunsaturated Fat
 
2
g
Monounsaturated Fat
 
8
g
Cholesterol
 
108
mg
36
%
Sodium
 
565
mg
25
%
Potassium
 
952
mg
27
%
Carbohydrates
 
20
g
7
%
Fiber
 
7
g
29
%
Sugar
 
4
g
4
%
Protein
 
25
g
50
%
Vitamin A
 
7410
IU
148
%
Vitamin C
 
20
mg
24
%
Calcium
 
66
mg
7
%
Iron
 
2
mg
11
%
* Percent Daily Values are based on a 2000 calorie diet.
Keyword enchiladas, green chile, salsa verde
Did you make this recipe?Mention @foodcourage or tag #foodcourage on Instagram!
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AIP, Chicken, Coconut-Free, Gluten-Free, Main Dishes, Paleo, Whole 30

Reader Interactions

Comments

  1. Marie says

    September 5, 2021 at 6:01 pm

    Can you freeze it with the avocado topping?

    Reply
    • Arika | FoodCourage says

      September 5, 2021 at 6:07 pm

      I haven’t tried freezing the avocado topping but I don’t think it would freeze very well. Plus, reheating it with the avocado would be a bit of an issue.

      Reply
  2. Tonya says

    October 19, 2021 at 6:04 pm

    5 stars
    This is so delicious and the enchilada sauce is what really makes it. It’s a flavor explosion and I can’t wait for lunch tomorrow to eat the leftovers. The avocado topping is definitely optional, because while it was good it was not as flavorful as the enchilada sauce. I may just make some guac and chips as a side next time. I may make the sauce just by itself to use for Taco Tuesday and such. Thank you so much for sharing!

    Reply
    • Arika | FoodCourage says

      October 19, 2021 at 7:45 pm

      Hey Tonya! Thanks so much for the great feedback. I’m glad you enjoyed it!

      Reply
      • Tonya says

        December 30, 2021 at 6:27 pm

        5 stars
        I made this again and this enchilada sauce is just magic. Have you ever tried making a soup from this recipe? That’s my plan for tomorrow!

        Reply
        • Arika | FoodCourage says

          December 30, 2021 at 7:01 pm

          Hey Tonya! It’s funny you asked that because I’ve been spending the past couple of days planning upcoming recipes and I actually was thinking about trying that! I’d love to hear how yours turns out.

          Reply
  3. Dani says

    June 11, 2024 at 9:27 pm

    5 stars
    I’ve been doing AIP for about 3 weeks now and I have hated the recipes I’ve made so far. This was my favorite and I would definitely make it again! So yummy and satisfying!

    Reply
    • Arika | FoodCourage says

      June 11, 2024 at 10:45 pm

      Hey Dani, That’s awesome! Thanks so much for the great feedback.

      Reply

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